{
  "_id": "6a1f9b98b401979e73430a84",
  "Package": "mnirs",
  "Title": "Muscle Near-Infrared Spectroscopy Processing and Analysis",
  "Version": "0.6.5",
  "Authors@R": "person(\"Jem\", \"Arnold\", , \"jem.arnold@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0003-3908-9447\"))",
  "Description": "Read, process, and analyse data from muscle near-infrared\nspectroscopy (mNIRS) devices. Import raw data from .csv or\n.xls(x) files and return time-series data and metadata.\nIncludes standardised methods for cleaning, filtering, and\npre-processing mNIRS data for subsequent analysis. Also\nincludes a custom plot theme and colour palette. Intended for\nmNIRS researchers and practitioners in exercise physiology,\nsports science, and clinical rehabilitation with minimal coding\nexperience required.",
  "License": "MIT + file LICENSE",
  "URL": "https://jemarnold.github.io/mnirs/,\nhttps://github.com/jemarnold/mnirs",
  "BugReports": "https://github.com/jemarnold/mnirs/issues",
  "VignetteBuilder": "quarto",
  "Config/Needs/website": "quarto, tidyverse",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "Config/roxygen2/version": "8.0.0",
  "Repository": "https://jemarnold.r-universe.dev",
  "Date/Publication": "2026-06-03 00:25:38 UTC",
  "RemoteUrl": "https://github.com/jemarnold/mnirs",
  "RemoteRef": "HEAD",
  "RemoteSha": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 03:08:23 UTC",
    "User": "root"
  },
  "Author": "Jem Arnold [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0003-3908-9447>)",
  "Maintainer": "Jem Arnold <jem.arnold@gmail.com>",
  "MD5sum": "e73aae2c46ae21eddc683c7bdf607574",
  "_user": "jemarnold",
  "_type": "src",
  "_file": "mnirs_0.6.5.tar.gz",
  "_fileid": "2340a990fd8a2fc0258ee85c5b2ab3de06e2b10f13bc345027c677ea6f83b3bf",
  "_filesize": 4692795,
  "_sha256": "2340a990fd8a2fc0258ee85c5b2ab3de06e2b10f13bc345027c677ea6f83b3bf",
  "_created": "2026-06-03T03:08:23.000Z",
  "_published": "2026-06-03T03:12:24.655Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79215236667,
      "time": 190,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7374990163"
    },
    {
      "job": 79215236622,
      "time": 161,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7374984056"
    },
    {
      "job": 79215236666,
      "time": 163,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7374984488"
    },
    {
      "job": 79215236635,
      "time": 198,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7374991794"
    },
    {
      "job": 79214910900,
      "time": 196,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7374950769"
    },
    {
      "job": 79215236663,
      "time": 114,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7374973552"
    },
    {
      "job": 79215236646,
      "time": 169,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7374985658"
    },
    {
      "job": 79215236637,
      "time": 160,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7374983499"
    },
    {
      "job": 79215236639,
      "time": 167,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7374985286"
    }
  ],
  "_buildurl": "https://github.com/r-universe/jemarnold/actions/runs/26861183130",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/jemarnold/mnirs",
  "_commit": {
    "id": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
    "author": "JEMSDESKTOP <jem.arnold@gmail.com>",
    "committer": "JEMSDESKTOP <jem.arnold@gmail.com>",
    "message": "0.6.5 delete orphaned .png & redundant tests\n",
    "time": 1780446338
  },
  "_maintainer": {
    "name": "Jem Arnold",
    "email": "jem.arnold@gmail.com",
    "login": "jemarnold",
    "bluesky": "@jemarnold.bsky.social",
    "linkedin": "in/jem--arnold",
    "orcid": "0000-0003-3908-9447",
    "twitter": "@jem_arnold",
    "description": "",
    "uuid": 132770429
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "lifecycle",
      "role": "Imports"
    },
    {
      "package": "readxl",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "tidyselect",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Suggests"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "quarto",
      "role": "Suggests"
    },
    {
      "package": "scales",
      "role": "Suggests"
    },
    {
      "package": "signal",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "zoo",
      "role": "Suggests"
    }
  ],
  "_owner": "jemarnold",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-46",
      "n": 6
    },
    {
      "week": "2025-47",
      "n": 4
    },
    {
      "week": "2025-48",
      "n": 2
    },
    {
      "week": "2025-49",
      "n": 5
    },
    {
      "week": "2025-50",
      "n": 2
    },
    {
      "week": "2025-51",
      "n": 1
    },
    {
      "week": "2025-52",
      "n": 1
    },
    {
      "week": "2026-01",
      "n": 1
    },
    {
      "week": "2026-02",
      "n": 1
    },
    {
      "week": "2026-06",
      "n": 6
    },
    {
      "week": "2026-09",
      "n": 3
    },
    {
      "week": "2026-11",
      "n": 4
    },
    {
      "week": "2026-12",
      "n": 2
    },
    {
      "week": "2026-13",
      "n": 2
    },
    {
      "week": "2026-14",
      "n": 3
    },
    {
      "week": "2026-15",
      "n": 1
    },
    {
      "week": "2026-16",
      "n": 2
    },
    {
      "week": "2026-19",
      "n": 4
    },
    {
      "week": "2026-20",
      "n": 2
    },
    {
      "week": "2026-23",
      "n": 3
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2025-11-15"
    },
    {
      "name": "v0.1.8",
      "date": "2025-12-14"
    },
    {
      "name": "v.0.1.9",
      "date": "2025-12-24"
    },
    {
      "name": "v0.3.0",
      "date": "2026-01-06"
    },
    {
      "name": "v0.4.0",
      "date": "2026-02-05"
    },
    {
      "name": "v0.5.0",
      "date": "2026-03-09"
    },
    {
      "name": "v0.6.0",
      "date": "2026-03-25"
    }
  ],
  "_stars": 3,
  "_contributors": [
    {
      "user": "jemarnold",
      "count": 55,
      "uuid": 132770429
    }
  ],
  "_userbio": {
    "uuid": 132770429,
    "type": "user",
    "name": "Jem Arnold"
  },
  "_downloads": {
    "count": 461,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mnirs"
  },
  "_devurl": "https://github.com/jemarnold/mnirs",
  "_pkgdown": "https://jemarnold.github.io/mnirs/",
  "_searchresults": 5,
  "_quarto": true,
  "_topics": [
    "quarto"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mnirs.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jemarnold/mnirs",
  "_realowner": "jemarnold",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.6.0",
      "date": "2026-03-30"
    },
    {
      "version": "0.6.2",
      "date": "2026-04-18"
    },
    {
      "version": "0.6.3",
      "date": "2026-05-07"
    },
    {
      "version": "0.6.4",
      "date": "2026-05-15"
    },
    {
      "version": "0.6.5",
      "date": "2026-06-02"
    }
  ],
  "_exports": [
    "breaks_timespan",
    "by_label",
    "by_lap",
    "by_sample",
    "by_time",
    "create_mnirs_data",
    "example_mnirs",
    "extract_intervals",
    "filter_butter",
    "filter_ma",
    "filter_mnirs",
    "filter_moving_average",
    "format_hmmss",
    "palette_mnirs",
    "read_mnirs",
    "replace_invalid",
    "replace_missing",
    "replace_mnirs",
    "replace_outliers",
    "resample_mnirs",
    "rescale_mnirs",
    "scale_color_mnirs",
    "scale_colour_mnirs",
    "scale_fill_mnirs",
    "shift_mnirs",
    "theme_mnirs"
  ],
  "_help": [
    {
      "page": "artinis_intervals.xlsx",
      "title": "10 Hz Artinis Oxysoft export recorded with Oxymon MKIII",
      "topics": [
        "artinis_intervals.xlsx"
      ]
    },
    {
      "page": "breaks_timespan",
      "title": "Breaks for time span data",
      "topics": [
        "breaks_timespan"
      ]
    },
    {
      "page": "by_time",
      "title": "Specify interval boundaries by time, label, lap, or sample",
      "topics": [
        "by_label",
        "by_lap",
        "by_sample",
        "by_time"
      ]
    },
    {
      "page": "create_mnirs_data",
      "title": "Create an _mnirs_ data frame with metadata",
      "topics": [
        "create_mnirs_data"
      ]
    },
    {
      "page": "example_mnirs",
      "title": "Get path to _mnirs_ example files",
      "topics": [
        "example_mnirs"
      ]
    },
    {
      "page": "extract_intervals",
      "title": "Extract intervals from _mnirs_ data",
      "topics": [
        "extract_intervals"
      ]
    },
    {
      "page": "filter_butter",
      "title": "Apply a Butterworth digital filter",
      "topics": [
        "filter_butter"
      ]
    },
    {
      "page": "filter_ma",
      "title": "Apply a moving average filter",
      "topics": [
        "filter_ma",
        "filter_moving_average"
      ]
    },
    {
      "page": "filter_mnirs",
      "title": "Filter a data frame",
      "topics": [
        "filter_mnirs",
        "filter_mnirs.butterworth",
        "filter_mnirs.moving_average",
        "filter_mnirs.smooth_spline"
      ]
    },
    {
      "page": "format_hmmss",
      "title": "Format time span data as h:mm:ss",
      "topics": [
        "format_hmmss"
      ]
    },
    {
      "page": "moxy_intervals.csv",
      "title": "0.5 Hz Moxy onboard export",
      "topics": [
        "moxy_intervals.csv"
      ]
    },
    {
      "page": "moxy_ramp.xlsx",
      "title": "2 Hz PerfPro export of Moxy data",
      "topics": [
        "moxy_ramp.xlsx"
      ]
    },
    {
      "page": "palette_mnirs",
      "title": "Custom _mnirs_ colour palette",
      "topics": [
        "palette_mnirs"
      ]
    },
    {
      "page": "plot.mnirs",
      "title": "Plot _mnirs_ objects",
      "topics": [
        "plot.mnirs"
      ]
    },
    {
      "page": "portamon-oxcap.xlsx",
      "title": "10 Hz Artinis Oxysoft export recorded with Portamon",
      "topics": [
        "portamon-oxcap.xlsx"
      ]
    },
    {
      "page": "print.mnirs",
      "title": "Methods for mnirs objects",
      "topics": [
        "print.mnirs"
      ]
    },
    {
      "page": "read_mnirs",
      "title": "Read _mnirs_ data from file",
      "topics": [
        "read_mnirs"
      ]
    },
    {
      "page": "replace_mnirs",
      "title": "Replace outliers, invalid, and missing values in _mnirs_ data",
      "topics": [
        "replace_invalid",
        "replace_missing",
        "replace_mnirs",
        "replace_outliers"
      ]
    },
    {
      "page": "resample_mnirs",
      "title": "Re-sample an _mnirs_ data frame",
      "topics": [
        "resample_mnirs"
      ]
    },
    {
      "page": "rescale_mnirs",
      "title": "Re-scale data range",
      "topics": [
        "rescale_mnirs"
      ]
    },
    {
      "page": "scale_colour_mnirs",
      "title": "Scales for custom _mnirs_ palette",
      "topics": [
        "scale_color_mnirs",
        "scale_colour_mnirs",
        "scale_fill_mnirs"
      ]
    },
    {
      "page": "shift_mnirs",
      "title": "Shift data range",
      "topics": [
        "shift_mnirs"
      ]
    },
    {
      "page": "theme_mnirs",
      "title": "Custom _mnirs_ ggplot2 theme",
      "topics": [
        "theme_mnirs"
      ]
    },
    {
      "page": "train.red_intervals.csv",
      "title": "10 Hz Train.Red App export",
      "topics": [
        "train.red_intervals.csv"
      ]
    }
  ],
  "_readme": "https://github.com/jemarnold/mnirs/raw/HEAD/README.md",
  "_rundeps": [
    "cellranger",
    "cli",
    "cpp11",
    "crayon",
    "data.table",
    "glue",
    "hms",
    "lifecycle",
    "magrittr",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "R6",
    "readxl",
    "rematch",
    "rlang",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "reading-mnirs-data.qmd",
      "filename": "reading-mnirs-data.html",
      "title": "Reading and Cleaning Data with {mnirs}",
      "engine": "quarto::html",
      "headings": [],
      "created": "2025-11-15 18:53:44",
      "modified": "2026-06-02 02:42:19",
      "commits": 20
    }
  ],
  "_score": 5.477121254719663,
  "_indexed": true,
  "_nocasepkg": "mnirs",
  "_universes": [
    "jemarnold"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.6.5",
      "date": "2026-06-03T03:11:00.000Z",
      "distro": "noble",
      "commit": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
      "fileid": "629c83874b371d33cb3ea319fa5224b6b4819a1aad81d07cda14ffe51cc45529",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jemarnold/actions/runs/26861183130"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.6.5",
      "date": "2026-06-03T03:10:33.000Z",
      "distro": "noble",
      "commit": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
      "fileid": "832e6f8fe8a9bee25ff3328bfa65d205a4fb85bc66c401866b4740cd26e0f0b3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jemarnold/actions/runs/26861183130"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.6.5",
      "date": "2026-06-03T03:10:51.000Z",
      "commit": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
      "fileid": "39c43b6d0694ce3a6854dc6427dc59511420e089495febe42df2bcc9aa3caea0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jemarnold/actions/runs/26861183130"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.6.5",
      "date": "2026-06-03T03:11:07.000Z",
      "commit": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
      "fileid": "9f3222ba80a60336b2cdec34898e7e556bd75c856d89acfc94c07746ab7322c8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jemarnold/actions/runs/26861183130"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.6.5",
      "date": "2026-06-03T03:10:35.000Z",
      "commit": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
      "fileid": "8c84f7143e18ced6afbd6fd51ed6ec22004e7550ff20806f93ecc73110761f69",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jemarnold/actions/runs/26861183130"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.6.5",
      "date": "2026-06-03T03:10:15.000Z",
      "commit": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
      "fileid": "4ff4f1afde6b5503390d1a0f619688b284c749d6c4ee11958493a6d11572d036",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jemarnold/actions/runs/26861183130"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.6.5",
      "date": "2026-06-03T03:10:10.000Z",
      "commit": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
      "fileid": "39bcc6a012c7c509200eb065812d1902758497c48b0da820bb0465ea9c2d5bd5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jemarnold/actions/runs/26861183130"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.6.5",
      "date": "2026-06-03T03:10:06.000Z",
      "commit": "3cf8828c1a67777ffc3c509972dd8a937c8a9766",
      "fileid": "60df593c0d2e2b762b4ecfabb2b5de3f15451bad526aa54e512ead9f1fa95ccf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jemarnold/actions/runs/26861183130"
    }
  ]
}